coelicolor can induce double-stranded DNA breakage at the 18-bp cutting site to promote homologous recombination and achieve efficient markerless deletion of large chromosome segment. Thus, we need time to apply the new method to delete the rest of the antibiotic biosynthetic gene clusters in the S. coelicolor genome. Recently, Gomez-Escribano & Bibb (2011) reported the sequential deletion of four antibiotic biosynthetic gene clusters (for Act, Red, CPK, and CDA) in S. coelicolor

M145 followed by introduction of point mutations into rpoB and rpsL. Introduction of the act, chloramphenicol, and congocidine biosynthetic gene clusters into the M145 derivative revealed dramatic increases in antibiotic production compared with the parental strain. In our experiments, deletion of the CDA and Red clusters (in FX21) I-BET-762 order resulted in slightly increased production of actinorhodin, but further deletion of the 900-kb subtelomeric segment in FX23 dramatically decreased actinorhodin production. Deletion of further PKS and NRPS gene clusters (ZM10 and ZM11) resulted in increased production of actinorhodin compared with

strain M145. These results suggest that some unknown genes from the 900-kb subtelomeric region affect the expression of the act cluster, and removing potentially competitive PKS and/or NRPS gene clusters may increase the production of actinorhodin. Although the nikkomycin (a peptidyl nucleoside antibiotic: Liao et al., 2010) biosynthetic gene cluster could be heterologously expressed in M145, introduction of the gene cluster into strains ZM4 and ZM12 did not lead to nikkomycin selleck production (Yuqing Tian & Huarong Tan, personal communication). Whether any of the deletions introduced in strains ZM4 and ZM12 may diminish the expression of heterologous gene cluster needs to be investigated. Expression of more exogenous PKS and NRPS biosynthetic gene clusters needs to be studied in these mutants. Komatsu et al. (2010) reported

Exoribonuclease stepwise deletion of a 1.4-Mb left subtelomeric region (containing the avermectin and flipin biosynthetic gene clusters) and the oligomycin biosynthetic gene cluster of the 9.02-Mb S. avermitilis linear chromosome. The exogenous streptomycin, cephamycin C, and pladienolide biosynthetic gene clusters could be efficiently expressed in the mutants, with production of the first two antibiotics being at levels higher than those of the native-producing species. In S. coelicolor, expression of several antibiotic biosynthetic gene clusters depends on both pathway-specific regulatory genes and many globally acting genes (Chater, 1992; Bibb, 1995). Microarray analysis of the whole genomic transcriptome reveals cross-regulation among disparate antibiotic biosynthetic pathways (Huang et al., 2005). Engineering of regulatory cascades and networks to control antibiotic biosynthesis in Streptomyces has been used to obtain overproducer strains (Martín & Liras, 2010).