No corresponding PCR products were obtained with the same mRNA sample as the template, indicating that the RNA sample was not contaminated with DNA. Figure 1 Reverse transcriptase-PCR analysis demonstrates a polycistronic MDV3100 ic50 transcript of mtsABC mRNA. Total RNA from S. iniae HD-1 was reverse transcribed into cDNA, and PCR was performed with ORF-specific primers. Each box contains products with the same primer pairs. For PCR, S. iniae HD-1 genomic DNA was used as the template (on the left), and for reverse transcriptase-PCR, S. iniae HD-1 RNA was used as the template (on the right). Sequence analysis of mtsABC ABC systems are widespread among living organisms

and have been detected in all genera of the three kingdoms of life. These systems show remarkable conservation in the primary sequence INCB018424 mw of the cassette and in the organization of constitutive domains or subunits [17, 18]. All ABC systems share a highly conserved ATP-hydrolyzing domain (nucleotide-binding domain [NBD]) that is unequivocally characterized by three short sequence motifs, i.e., Walker A, Walker B, and a signature motif that is unique to ABC proteins and is located upstream of the Walker B motif [19–24]. BLAST of the derived amino acid sequences of the mtsABC operon indicated that mtsA encodes a metal solute-binding lipoprotein (MtsA, 309 residues), mtsB encodes

an ATP-binding protein (MtsB, see more 242 residues), and mtsC encodes a transmembrane permease protein (MtsC, 283 residues). Gemcitabine purchase The closest homologs for these proteins are putative metal ABC transporter proteins encoded by the mtu locus of Streptococcus uberis 0140J and the mts locus of Streptococcus equi subsp. zooepidemicus MGCS10565 (Additional file 1, Table S1, and Figure 2). mtsA contains a helical backbone metal receptor (TroA-like domain) that functions in the ABC transport of ferric siderophores and

metal ions such as Fe3+, Mn2+, Cu2+, and/or Zn2+ (Additional file 1, Table S2). mtsB contains Walker site A, Walker site B, a signature sequence, and the 4th motif as defined by Linton & Higgins [25]. mtsC contains eight transmembrane subunits (TMs) of the periplasmic-binding protein (PBP)-dependent ABC transporters that are possibly involved in the uptake of siderophores, heme, vitamin B12, or divalent cations (Additional file 1, Table S2). Based on these observations, we concluded that mtsABC is a member of the ABC transporter systems. Figure 2 Sequence alignment of MtsABC and its homologues. The amino acid sequences were aligned using the the SECentral Align Multi 4 program. Dark shading represented identical amino acid residues. Three patterns of signal peptide (Additional file 1, Table S3) were used to identify bacterial lipoproteins from bioinformatics data [26]. To characterize the MtsA protein, the ScanProsite analysis was performed.